Publications

Publications by year

The 20 most recent publications

Incontinentia pigmenti underlies thymic dysplasia, autoantibodies to type I IFNs, and viral diseases.

Rosain J, Le Voyer T, Liu X, ..., Anderson MS, Casanova JL

J. Exp. Med. 221 (11) - [2024-11-04; online 2024-10-01]

Autoimmunity and Serology Profiling [Service]

The lncRNA SNHG26 drives the inflammatory-to-proliferative state transition of keratinocyte progenitor cells during wound healing.

Li D, Liu Z, Zhang L, ..., Sommar P, Xu Landén N

Nat Commun 15 (1) 8637 [2024-10-05; online 2024-10-05]

NGI Single cell [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment.

Techameena P, Feng X, Zhang K, Hadjab S

Nat Commun 15 (1) 8585 [2024-10-04; online 2024-10-04]

NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease.

Meng L, Jin H, Yulug B, ..., Uhlén M, Mardinoglu A

Alzheimers Res Ther 16 (1) 213 [2024-10-02; online 2024-10-02]

NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

IL-7-dependent and -independent lineages of IL-7R-dependent human T cells.

Arango-Franco CA, Ogishi M, Unger S, ..., Casanova JL, Puel A

J. Clin. Invest. 134 (19) - [2024-10-01; online 2024-10-01]

Autoimmunity and Serology Profiling [Service]

DOI Crossref

Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest

Díaz-Navarro S, Díez-Hermano S, Rojo-Guerra MA, ..., Gunther T, Uriarte MH

Journal of Archaeological Science: Reports 58 (-) 104730 [2024-10-00; online 2024-10-00]

Ancient DNA [Service]

PubMed DOI Crossref

Merging multi-omics with proteome integral solubility alteration unveils antibiotic mode of action.

Maity R, Zhang X, Liberati FR, ..., Aínsa JA, Sancho J

Elife 13 (-) - [2024-09-27; online 2024-09-27]

Chemical Proteomics [Collaborative]

PubMed DOI Crossref

CDK4 is co-amplified with either TP53 promoter gene fusions or MDM2 through distinct mechanisms in osteosarcoma.

Saba KH, Difilippo V, Styring E, ..., Baumhoer D, Nord KH

npj Genom. Med. 9 (1) 42 [2024-09-25; online 2024-09-25]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Chemical Exposomics in Human Plasma by Lipid Removal and Large-Volume Injection Gas Chromatography–High-Resolution Mass Spectrometry

Xie H, Sdougkou K, Bonnefille B, ..., Rantakokko P, Martin JW

Environ. Sci. Technol. - (-) - [2024-09-24; online 2024-09-24]

Exposomics [Technology development]

PubMed DOI Crossref

Determining Marine Biodegradation Kinetics of Chemicals Discharged from Offshore Oil Platforms─Whole Mixture Testing at High Dilutions Increases Environmental Relevance.

Møller MT, Birch H, Sjøholm KK, ..., Papazian S, Mayer P

Environ. Sci. Technol. - (-) - [2024-09-18; online 2024-09-18]

Exposomics [Collaborative]

PubMed DOI Crossref

Longitudinal Exposomics in a Multiomic Wellness Cohort Reveals Distinctive and Dynamic Environmental Chemical Mixtures in Blood.

Sdougkou K, Papazian S, Bonnefille B, ..., Martin LJ, Martin JW

Environ. Sci. Technol. 58 (37) 16302-16315 [2024-09-17; online 2024-09-05]

Exposomics [Collaborative]

PubMed DOI Crossref

Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19.

Li X, Jayaprasad S, Einarsdottir E, ..., Kawakami T, Palacios-Gimenez OM

Sci Data 11 (1) 997 [2024-09-12; online 2024-09-12]

NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Enrichment of Cis-Acting Regulatory Elements in Differentially Methylated Regions Following Lipopolysaccharide Treatment of Bovine Endometrial Epithelial Cells.

Jhamat N, Guo Y, Han J, ..., Andersson G, Niazi A

Int J Mol Sci 25 (18) - [2024-09-11; online 2024-09-11]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Inherited human RelB deficiency impairs innate and adaptive immunity to infection.

Le Voyer T, Maglorius Renkilaraj MRL, Moriya K, ..., Tangye SG, Puel A

Proc. Natl. Acad. Sci. U.S.A. 121 (37) e2321794121 [2024-09-10; online 2024-09-04]

Autoimmunity and Serology Profiling [Service]

PubMed DOI Crossref

Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.

Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y

J. Clin. Invest. - (-) - [2024-09-10; online 2024-09-10]

CRISPR Functional Genomics [Service]

PubMed DOI Crossref

Immune system adaptation during gender-affirming testosterone treatment

Tadepally L, Consiglio C, Sardh F, ..., Landegren N, Brodin P

Nature 633 (-) 155-164 [2024-09-04]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

ADAR3 modulates neuronal differentiation and regulates mRNA stability and translation.

Karlström V, Sagredo EA, Planells J, ..., Visa N, Öhman M

Nucleic Acids Res. - (-) - [2024-09-01; online 2024-09-01]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

New finds of European bison identified through the systematic DNA-based species identification of archaeological remains of large bovines from Scandinavia

Rosengren E, Rossi C, Heino MT, Sinding MHS

Journal of Archaeological Science: Reports 57 (-) 104668 [2024-09-00; online 2024-09-00]

Ancient DNA [Service]

PubMed DOI Crossref

Immune system adaptation during gender-affirming testosterone treatment.

Lakshmikanth T, Consiglio C, Sardh F, ..., Landegren N, Brodin P

Nature 633 (8028) 155-164 [2024-09-00; online 2024-09-04]

Affinity Proteomics Stockholm [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

DNA methylation governs the sensitivity of repeats to restriction by the HUSH-MORC2 corepressor.

Pandiloski N, Horváth V, Karlsson O, ..., Jakobsson J, Douse CH

Nat Commun 15 (1) 7534 [2024-08-30; online 2024-08-30]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]